o
    <c	'                     @   s   d dl Z d dlZd dlmZ d dlm  mZ d dl	m
Z d dlmZ d dlmZ d dlZdd Zdd	 ZdddZdd Zdd Zdd Zdd Zdd Zdd ZdddZdS )     N)slcStack)linalg)lapack)labelc           	      C   s   | j d }t| dd \}}d}t|D ]}|t|| d 7 }qt|}t|t| }t	| t	| ||d  d|  dkrN|dk rNd}|S d}|S )z checks if the pixel is PS r         d   F   g?)
shapelapcheevxrangeabsnpsqrtstdmeanprint)	coh_mat	amplitudendZEigen_valueZEigen_vectorsiZamp_dispersiontemp_quality r   R/home/exouser/operations/rsmas_insar/tools/MiaplPy/miaplpy/objects/invert_pixel.py
test_PS_py   s   

 r   c              
   C   s   |j d }t|}d}t|D ]!}t|d |D ]}|td| ||f || ||    7 }qqt|d |d |  }|S )z Returns squeesar PTA coherence between the initial and estimated phase vectors.
    :param ph_filt: np.angle(coh) before inversion
    :param vec_refined: refined complex vector after inversion
    r   r                 ?r   )r
   r   angler   expreal)Zph_filtvecnZang_vectempr   kZtemp_cohr   r   r   gam_pta'   s   

,r%   r   c                 C   s<   ddl m} | }ddl}|j|}|j| |}||fS )zL create a custom colormap based on visible portion of electromagnetive wave.r   )rgbN)Zmiaplpy.spectrumRGBr&   
matplotlibcolorsListedColormap	Normalize)vminvmaxr&   mplcmapnormr   r   r   custom_cmap9   s   r0   c           
   	   C   s   | | | |  }t jdddt jd}d}t|jd D ]N}|| t |d dt |   }d}tdd	D ]}	|d
|	d  t d|d  |	d   7 }q6d| }|dkrXd}|dk r^d}||kri|| } |S q|S )N{Gz?r   gMbP?dtypeg?r   gQ?g)\(?e   r   )r   arangefloat32r   r
   r   r   )
N1N2alphaN	distancesZcritical_distancer   valuepvaluetr   r   r   	ks_lut_cyD   s&   $,rA   c                 C   s   |    d S )N)sort)xr   r   r   sortingX   s   rD   c              
   C   s  |j d }tj|tjd}| d }	| d }
|j d }|j d }d}|j d }t|j d D ]}|	||  }|dk r=|d7 }||krE|} nq-|| }|| }tj|tjd}t|D ]}|	|||   ||< qZd}|j d }t|j d D ]}|
||  }|dk r|d7 }||kr|} nqu|| }|| }tj|tjd}t|D ]}|
|||   ||< qt|D ]}t|||	|
f ||< qt| tj||fdd}t|D ]7}t|D ]0}tj|tjd}t|D ]}t|||| || f ||< qt| t	||||||f< qqt
|dd}|||f }t||}tj|dftjd}d}t|D ](}t|D ] }|||f |krQ|| ||df< || ||df< |d7 }q2q,|S )Nr   r2   r   r   long)connectivity)r
   r   zerosr8   r   int32r   rD   iutZks2smapletest_pyr   count)dataZ	input_slcZdef_sample_rowsZdef_sample_colsreference_rowreference_coldistance_thresholdn_imagerefZrow_0Zcol_0lengthwidtht1t2r   r#   Zs_rowsZref_rowsample_rowsZs_colsref_colsample_colsdistancetestZks_labelZ	ref_labelZshpsr   r   r   get_shp_row_col_c\   s|   




"
rZ   c                 C   sP   | j d }| j d }d}t|D ]}t|D ]}| ||f |kr$|d7 }qq|S )Nr   r   )r
   r   )rC   r>   n1n2outr   r@   r   r   r   rJ      s   

rJ   c                 C   s&   z
t |  d}W |S    d}Y |S )zB Checks the positive semi definitness of a matrix. desired: res=0 r   r   )LAcholesky)rC   resr   r   r   is_semi_pos_def_chol_cy   s   
ra   c                 C   s   d}d}t j| jd | jd ft jd}d}t| jd D ]}t| jd D ]}| ||f |||f< q&qd}|dk rgt|}|dkrG	 ||fS t| jd D ]}|||f  |7  < qN|d9 }|d7 }|dk s:||fS )z9 Regularizes a matrix to make it positive semi definite. r   r   r2   gư>r   r   )r   rG   r
   r8   r   ra   )Mstatusr@   r<   enr   r   r   r   regularize_matrix_cy   s(    
re      	   
   sequentialc           +   	   C   s  d}t j|d d  |d d d t jd}t j|d d gt jd}t j|d d  |d d d t jd}t j|d d gt jd}	d}
|drYt|}| \}}}d}
nt|d}|d	 j	\}}}W d    n1 srw   Y  t
||d
}| d d | d d | d d | d d g}|d }|d }|d }|d }| d | | d | f}t| |
r|jd|dd}nMt|d6}|d	 d d |d |d |d |d f }|d d d |d |d |d |d f }W d    n1 sw   Y  |t d|  }t j|t jd}t j|t jd}|| }t||||||	|}|j	d }t j||ft jd}t|D ]} t|D ]}!||!|| df || df f ||!| f< qBq<t|}"d}#|dk rt |d|d |d f }$t|D ]"}!||!|d |d f |$ ||!< t ||!|d |d f ||!< qyt|"|}#|#}%nFt|dkr|dd dkrt||||\}}&}#t|&||}ntj|d|ddd\}}'}#t jt |dd}tt |"|}%t|% t|D ]$}!|!dkr||! d ||!< q||! t dt ||!   ||!< q|d | }d||dk < d|||k< |d | }d||dk < d|||k< t j |!t"|!t"dd\}(})t |d d |)|(f }*||#|"|t j|*dd||d |d fS )N
   r   r   r2   FzslcStack.h5Trphaser1   r   r      slc)datasetNamebox	print_msgr   r      rh   )Zlag)axisy                r5   )sparse)#r   r7   rH   arrayendswithr   get_sizeh5pyFiler
   rA   r   readr   empty	complex64rG   r8   rZ   r   rI   Zest_corr_pyconjr   r   lenZsequential_phase_linking_pyZdatum_connect_pyZphase_linking_process_pyr   r%   r   meshgridastypeint)+coordZ	stackfileZrange_windowZazimuth_windowZphase_linking_methodZdefault_mini_stack_sizerU   rL   rW   rM   Z	slc_stackZStackObjrO   rQ   rR   frN   ro   Zrow1row2col1col2rK   Zpatch_slc_imagesZpatch_phaseZpatch_amplitudeZvec_refinedZamp_refinedZtotal_num_mini_stacksshpZnum_shpZCCGr@   mr   r   x0Ztemp_quality_fullZsqueezed_imagesZnovalrC   ywinr   r   r   process_pixel   s   ((
,.0

*

$
 

( &r   )r   r   )rf   rg   rh   )osnumpyr   Zmiaplpy.objects.slcStackr   Zmiaplpy.lib.utilslibutilsrI   scipyr   r^   scipy.linalgr   r   Zskimage.measurer   rw   r   r%   r0   rA   rD   rZ   rJ   ra   re   r   r   r   r   r   <module>   s&   
K
	
d